freeflux.io.inputs
==================

.. py:module:: freeflux.io.inputs

.. autoapi-nested-parse::

   Define data input functions.



Attributes
----------

.. autoapisummary::

   freeflux.io.inputs.__author__


Functions
---------

.. autoapisummary::

   freeflux.io.inputs.read_model_from_file
   freeflux.io.inputs.read_preset_values_from_file
   freeflux.io.inputs.read_initial_values
   freeflux.io.inputs.read_measurements_from_file


Module Contents
---------------

.. py:data:: __author__
   :value: 'Chao Wu'


.. py:function:: read_model_from_file(file)

   :param file: tsv or excel file with reactions.
   :type file: file path


.. py:function:: read_preset_values_from_file(file)

   :param file: tsv or excel file.
   :type file: file path


.. py:function:: read_initial_values(ini, ids)

   :param ini: Initial values.
   :type ini: ser of file in .tsv or .xlsx
   :param ids: IDs of fluxes or concentrations in correct order.
   :type ids: list


.. py:function:: read_measurements_from_file(file, inst_data=False)

   :param file: tsv or excel file.
   :type file: file path
   :param inst_data: If True, additional column of timepoints is used as index (multiindex).
   :type inst_data: bool