freeflux.solver.lpsolver
========================

.. py:module:: freeflux.solver.lpsolver

.. autoapi-nested-parse::

   Define the FBAModel class.



Attributes
----------

.. autoapisummary::

   freeflux.solver.lpsolver.__author__


Classes
-------

.. autoapisummary::

   freeflux.solver.lpsolver.FBAModel


Module Contents
---------------

.. py:data:: __author__
   :value: 'Chao Wu'


.. py:class:: FBAModel

   .. py:attribute:: model


   .. py:method:: build_flux_variables(fluxids, flux_bounds)

      :param fluxids: Flux IDs.
      :type fluxids: list
      :param flux_bounds: Reaction ID => [lower bound, upper bound].
      :type flux_bounds: dict



   .. py:method:: build_objective(objective, direction)

      :param objective: Reaction ID => coefficient, i.e., objective function.
      :type objective: dict
      :param direction: Optimization direction.
      :type direction: {"max", "min"}



   .. py:method:: build_mass_balance_constraints(stoy_mat)

      :param stoy_mat: Stoichiometric matrix.
      :type stoy_mat: df



   .. py:method:: build_objective_constraint(objective, max_obj, gamma)

      :param objective: Reaction ID => coefficient, i.e., objective function.
      :type objective: dict
      :param max_obj: Optimal objective.
      :type max_obj: float
      :param gamma: A value in [0, 1].
      :type gamma: float



   .. py:method:: remove_objective()


   .. py:method:: solve_flux()