10.1.2.1.3. freeflux.core.metabolite

Define the Metabolite class.

10.1.2.1.3.1. Attributes

__author__

10.1.2.1.3.2. Classes

Metabolite

Define Metabolite object which constitutes a Reaction.

10.1.2.1.3.3. Module Contents

freeflux.core.metabolite.__author__ = 'Chao Wu'

class freeflux.core.metabolite.Metabolite(id, atoms=None)

Define Metabolite object which constitutes a Reaction.

Metabolites are considered identical when they have the same IDs and atoms.

Parameters:

• id (str) – Metabolite ID.

• atoms (str or list of str or None) – Carbons in metabolite, e.g., ‘abcd’ for metabolite without equivalents, and [‘abcd’, ‘dcba’] for metabolite with equivalents.

id

Metabolite ID.

Type:

str

atoms_info

equivalent => coefficient, e.g., {‘abcd’: 1.0} or {‘abcd’: 0.5, ‘dcba’: 0.5}.

Type:

dict

n_carbons

# of carbons in metabolite.

Type:

int

host_reactions

Reactions hosting the metabolite.

Type:

set of Reaction or None

id

atoms = None

host_reactions = None

__hash__()

__eq__(other)

Parameters:

other (Metabolite)

property atoms_info

property n_carbons

__repr__()