10.1.3.1.1. freeflux.io.inputs

Define data input functions.

10.1.3.1.1.1. Attributes

__author__

10.1.3.1.1.2. Functions

read_model_from_file(file)
read_preset_values_from_file(file)
read_initial_values(ini, ids)
read_measurements_from_file(file[, inst_data])

10.1.3.1.1.3. Module Contents

freeflux.io.inputs.__author__ = 'Chao Wu'

freeflux.io.inputs.read_model_from_file(file)

Parameters:

file (file path) – tsv or excel file with reactions.

freeflux.io.inputs.read_preset_values_from_file(file)

Parameters:

file (file path) – tsv or excel file.

freeflux.io.inputs.read_initial_values(ini, ids)

Parameters:

• ini (ser of file in .tsv or .xlsx) – Initial values.

• ids (list) – IDs of fluxes or concentrations in correct order.

freeflux.io.inputs.read_measurements_from_file(file, inst_data=False)

Parameters:

• file (file path) – tsv or excel file.

• inst_data (bool) – If True, additional column of timepoints is used as index (multiindex).